Source code for software

#
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##  SPDX-FileCopyrightText: © 2007-2023 Benedict Verhegghe <bverheg@gmail.com>
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##  This file is part of pyFormex 3.4  (Thu Nov 16 18:07:39 CET 2023)
##  pyFormex is a tool for generating, manipulating and transforming 3D
##  geometrical models by sequences of mathematical operations.
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"""Detecting and checking installed software

A module to help with detecting required software and helper software,
and to check the versions of it.
"""

import os
import sys
import importlib
import re
import operator

import pyformex as pf
from pyformex import process

# We have included this source here because distutils will be removed
# from Python, the replacement setuptools.distutils does not contain
# version.LooseVersion, and the recommanded Version replacement from
# packaging.version only deals with Python style version numbers.
# We however also want to treat version numbers of a bunch of non-Python
# packages, which may not follow Python's versioning style.

class RequirementError(Exception):
    pass


[docs]class Version: """Abstract base class for version numbering classes. Just provides constructor (__init__) and reproducer (__repr__), because those seem to be the same for all version numbering classes; and route rich comparisons to _cmp. Based on distutils.version, which is scheduled for withdrawal from Python. Interface for version-number classes -- must be implemented by the following classes (the concrete ones -- Version should be treated as an abstract class):: __init__ (string) - create and take same action as 'parse' parse (string) - convert a string representation to whatever internal representation is appropriate for this style of version numbering __str__ (self) - convert back to a string; should be very similar (if not identical to) the string supplied to parse __repr__ (self) - generate Python code to recreate the instance _cmp (self, other) - compare two version numbers ('other' may be an unparsed version string, or another instance of your version class) """ def __init__(self, vstring): self.parse(vstring) def __repr__(self): return "%s ('%s')" % (self.__class__.__name__, str(self)) def __eq__(self, other): c = self._cmp(other) if c is NotImplemented: return c return c == 0 def __lt__(self, other): c = self._cmp(other) if c is NotImplemented: return c return c < 0 def __le__(self, other): c = self._cmp(other) if c is NotImplemented: return c return c <= 0 def __gt__(self, other): c = self._cmp(other) if c is NotImplemented: return c return c > 0 def __ge__(self, other): c = self._cmp(other) if c is NotImplemented: return c return c >= 0
[docs]class SaneVersion(Version): """Version numbering for anarchists and software realists. Based on distutils.version, which is scheduled for removal from Python. Implements the standard interface for version number classes as described above. A version number consists of a series of numbers, separated by either periods or strings of letters. When comparing version numbers, the numeric components will be compared numerically, and the alphabetic components lexically. The following are all valid version numbers, in no particular order: 1.5.1 1.5.2b2 161 3.10a 8.02 3.4j 1996.07.12 3.2.pl0 3.1.1.6 2g6 11g 0.960923 2.2beta29 1.13++ 5.5.kw 2.0b1pl0 In fact, there is no such thing as an invalid version number under this scheme; the rules for comparison are simple and predictable, but may not always give the results you want (for some definition of "want"). Examples -------- >>> SaneVersion('2.2beta29').version [2, 2, 'beta', 29] """ component_re = re.compile(r'(\d+ | [a-z]+ | \.)', re.VERBOSE) def parse(self, vstring): # I've given up on thinking I can reconstruct the version string # from the parsed tuple -- so I just store the string here for # use by __str__ self.vstring = vstring components = [x for x in self.component_re.split(vstring) if x and x != '.'] for i, obj in enumerate(components): try: components[i] = int(obj) except ValueError: pass self.version = components def __str__(self): return self.vstring def __repr__(self): return "SaneVersion ('%s')" % str(self) def _cmp(self, other): if isinstance(other, str): other = SaneVersion(other) elif not isinstance(other, SaneVersion): return NotImplemented if self.version == other.version: return 0 if self.version < other.version: return -1 if self.version > other.version: return 1
[docs]class Software(): """Register for software versions. This class holds a register of the version of installed software. The class is not intended to be used directly, but rather through the derived classes Module and External. Parameters ---------- name: str The software name as known in pyFormex: this is often the same as the real software name, but can be different if the real software name is complex. We try to use simple lower case names in pyFormex. The default software object only has two attributes: Examples -------- >>> np = Software('numpy') >>> Software.print_all() numpy (** Not Found **) >>> Software.has('numpy') '' >>> np.detect('detected') 'detected' >>> Software.has('numpy') 'detected' >>> Software.require('numpy') >>> Software.has('foo') Traceback (most recent call last): pyformex.software.RequirementError: foo is not a registered Software >>> foo = Software('foo') >>> Software.require('foo') Traceback (most recent call last): pyformex.software.RequirementError: Required Software 'foo' (foo) not found >>> Software.print_all() numpy (detected) foo (** Not Found **) >>> Software('foo') Traceback (most recent call last): ValueError: A Software with name 'foo' is already registered """ register = dict() def __init__(self, name): """Create a registered software name""" if name in Software.register: raise ValueError(f"A {self.__class__.__name__} " f"with name '{name}' is already registered") self.name = name self._version = None self.__class__.register[name] = self def __str__(self): return f"{self.__class__.__name__} {self.name} {self._version}" @property def version(self): """Return the version of the software, if installed. If the software has already been detected, just returns the stored version string. Else, runs the software :meth:`detect` method and stores and returns the version string. Returns ------- str The version of the software, or an empty string if the software can not be detected. """ if self._version is None: self.detect() return self._version @version.setter def version(self, value): self._version = value
[docs] def detect(self, version='', fatal=False, quiet=False): """Detect the version of the software. Parameters ---------- version: str The version string to be stored for a detected software. The default empty string means the software was not detected. Derived classes should call this method fromt their detect method and pass a non-empty string for detected softwares. fatal: bool, optional If True and the software can not be loaded, a fatal exception is raised. Default is to silently ignore the problem and return an empty version string. quiet: bool, optional If True, the whole operation is done silently. The only information about failure will be the returned empty version string. Returns ------- str The version string of the software, empty if the software can not be loaded. Notes ----- As a side effect, the detected version string is stored for later reuse. Thus subsequent tests will not try to re-detect. """ if version: pf.debug(f"Congratulations! You have {self.name} ({version})", pf.DEBUG.DETECT) else: if not fatal: pf.debug(f"ALAS! I could not find {self.__class__.__name__} " f"'{self.name}' on your system", pf.DEBUG.DETECT) if fatal: raise pf.RequirementsError( f"""\ A required {self.__class__.__name__} was not found: {self.name} You should install this software and restart pyFormex.\ """) self.version = version return self.version
[docs] @classmethod def detect_all(clas): """Detect all registered softwares. Usually, the detection is only performed when needed. Calling this method will perform the detection for all registered softwares. """ for name in clas.register: clas.register[name].detect()
[docs] @classmethod def print_all(clas): """Print the list of registered softwares""" for name in clas.register: version = clas.register[name].version if not version: version = '** Not Found **' print(f" {name} ({version})")
[docs] @classmethod def detected(clas, all=False): """Return the successfully detected softwares and their version Returns ------- dict A dict with the software name as key and the detected version as value. """ return dict([(k, clas.register[k].version) for k in clas.register if all or clas.register[k].version])
[docs] @classmethod def has(clas, name, check=False, fatal=False, quiet=False): """Test if we have the named software available. Returns a nonzero (version) string if the software is available, or an empty string if it is not. By default, the software is only checked on the first call. The optional argument check==True forces a new detection. """ if name not in clas.register: raise RequirementError(f"{name} is not a registered {clas.__name__}") if check or clas.register[name].version is None: clas.register[name].detect(fatal=fatal, quiet=quiet) return clas.register[name].version
[docs] @classmethod def check(clas, name, version): """Check that we have a required version of a software. """ ver = clas.has(name) return compareVersion(ver, version)
[docs] @classmethod def require(clas, name, version=None): """Ensure that the named Python software/version is available. Checks that the specified software is available, and that its version number is not lower than the specified version. If no version is specified, any version is ok. Returns if the required software/version could be loaded, else an error is raised. """ if pf.sphinx: # Do not check when building docs return ver = clas.has(name) if not ver: realname = clas.register[name].name errmsg = f""".. **{clas.__name__} {name} not found!** You activated some functionality requiring the {clas.__name__} '{realname}'. However, the {clas.__name__} '{realname}' could not be found. Probably it is not installed on your system. """ pf.error(errmsg) raise RequirementError( f"Required {clas.__name__} '{name}' ({realname}) not found") else: if version is not None: if not compareVersion(ver, version): realname = clas.register[name].name errmsg = f""".. **{clas.__name__} version {name} ({ver}) does not meet requirements ({version})!** You activated some functionality requiring {clas.__name__} '{realname}'. However, the required version for that software could not be found. """ pf.error(errmsg) raise RequirementError( f"Required version ({version}) of {clas.__name__} " f"'{name}' ({realname}) not found")
[docs]class Module(Software): """Register for Python module version detection rules. This class holds a register of version detection rules for installed Python modules. Each instance holds the rule for one module, and it is automatically registered at instantiation. The modules used by pyFormex are declared in this module, but users can add their own just by creating a Module instance. Parameters ---------- name: str The module name as known in pyFormex: this is often the same as the Python module name, but can be different if the Python module name is complex. We try to use simple lower case names in pyFormex. modname: str, optional The correct Python package.module name. If not provided, it is equal to the pyFormex name. attr: str or tuple of str, optional If a str, it is the name of the attribute holding the module version. This should be an attribute of the module `modname`. The default is '__version__', as it is used by many projects. If the version is not stored in a direct attribute of the same module as used for the detection, then a tuple of strings can be specified, starting with the Python module name in which the version attribute is stored, and a list of subsequent attribute names leading to the version. In this case the first element of the tuple is always a module name. If it is the same as `modname`, an empty string may be specified. If the final attribute is a callable, it will be called to get the version. The result is always converted to str before being stored as the version. incompatible: tuple of str, optional A list of incompatible modules. If any of these modules is loaded, the Module will not be tried. Beware: this should be the actual module names, not the pyFormex component name, which is all lower case. Examples -------- >>> Module.register.clear() >>> Module.detect_all() >>> Module.print_all() >>> np = Module('numpy') >>> pil = Module('pil', modname='PIL', attr='VERSION') >>> Module.print_all() numpy (1...) pil (** Not Found **) >>> SaneVersion(Module.has('numpy')) >= SaneVersion('1.16') True >>> Module.print_all() numpy (1...) pil (** Not Found **) >>> Module.has('foo') Traceback (most recent call last): pyformex.software.RequirementError: foo is not a registered Module >>> Module.require('foo') Traceback (most recent call last): pyformex.software.RequirementError: foo is not a registered Module >>> foo = Module('foo','FooBar') >>> Module.has('foo') '' >>> Module.require('foo') Traceback (most recent call last): pyformex.software.RequirementError: Required Module 'foo' (FooBar) not found Now fake a detection of Module 'foo' >>> Module.register['foo'].version = '1.2.3' >>> Module.has('foo') '1.2.3' >>> Module.require('foo') >>> Module.require('foo','>= 1.1.7') >>> Module.require('foo','>= 1.3.0') Traceback (most recent call last): pyformex.software.RequirementError: Required version (>= 1.3.0) of Module 'foo' (FooBar) not found """ register = dict() def __init__(self, name, modname=None, attr=None, incompatible=None): """Create a registered Python module detection rule""" super().__init__(name) if modname is None: modname = name # default: name == modname if attr is None: attr = '__version__' # many packages use this self.name = modname self.attr = attr self.incompatible = incompatible
[docs] def detect(self, fatal=False, quiet=False): """Detect the version of the module. Parameters ---------- fatal: bool, optional If True and the module can not be loaded, a fatal exception is raised. Default is to silently ignore the problem and return an empty version string. quiet: bool, optional If True, the whole operation is done silently. The only information about failure will be the returned empty version string. Returns ------- str The version string of the module, empty if the module can not be loaded. Notes ----- As a side effect, the detected version string is stored for later reuse. Thus subsequent tests will not try to re-detect. """ try: pf.debug(self.name, pf.DEBUG.DETECT) if self.incompatible: if any([m in sys.modules for m in self.incompatible]): raise ImportError( f"Module {self.name} is incompatible with" f" {self.incompatible}") m = importlib.import_module(self.name) pf.debug(m, pf.DEBUG.DETECT) if isinstance(self.attr, str): # simple attribute in loaded module ver = (self.attr,) else: # tuple of subsequent attributes, first is module name if self.attr[0]: m = importlib.import_module(self.attr[0]) pf.debug(m, pf.DEBUG.DETECT) ver = self.attr[1:] for a in ver: m = getattr(m, a) pf.debug(m, pf.DEBUG.DETECT) except Exception as e: # failure: unexisting or unregistered modules if fatal: raise e m = '' # If the attribute is a callable, call it if callable(m): m = m() # if a tuple is returned, turned it into a string if isinstance(m, tuple): m = '.'.join(map(str, m)) # make sure version is a string (e.g. gl2ps uses a float!) version = str(m) super().detect(version, fatal) return self.version
Module('pyformex') Module('calpy') Module('docutils') Module('gl2ps', attr='GL2PS_VERSION') Module('gnuplot', modname='Gnuplot') # Module('ipython', modname='IPython',) # Module('ipython-qt', modname='IPython.frontend.qt',) Module('matplotlib') Module('meshio') Module('moderngl') Module('numpy') Module('pil', modname='PIL') Module('pydicom') Module('pyopengl', modname='OpenGL') Module('pyqt5', modname='PyQt5.QtCore', attr='PYQT_VERSION_STR', incompatible=('PySide2',)) Module('pyqt5gl', modname='PyQt5.QtOpenGL', attr=('PyQt5.QtCore', 'PYQT_VERSION_STR'), incompatible=('PySide2',)) Module('pyside2', modname='PySide2', incompatible=('PyQt5',)) Module('scipy') Module('sphinx') Module('vtk', attr='VTK_VERSION')
[docs]class External(Software): """Register for external application version detection rules. This class holds a register of version detection rules for installed external applications. Each instance holds the rule for one application, and it is automatically registered at instantiation. The applications used by pyFormex are declared in this module, but users can add their own just by creating an External instance. Parameters ---------- name: str The application name as known in pyFormex: this is often the same as the executable name, but can be different if the executable name is complex. We try to use simple lower case names in pyFormex. command: str The command to run the application. Usually this includes an option to make the application just report its version and then exit. The command should be directly executable as-is, without invoking a new shell. If a shell is required, it should be made part of the command (see e.g. tetgen). Do not use commands that take a long time to load and run. regex: r-string A regular expression that extracts the version from the output of the command. If the application does not have or report a version, any non-empty string is accepted as a positive detection (for example the executable's name in a bin path). The regex string should contain one set of grouping parentheses, delimiting the part of the output that will be stored as version. If the output of the command does not match, an empty string is stored. Examples -------- >>> External.register.clear() >>> External.detect_all() >>> External.print_all() """ register = dict() def __init__(self, name, command, regex): """Create a registered external executable detection rule""" super().__init__(name) self.command = command self.regex = regex
[docs] def detect(self, fatal=False, quiet=False): """Detect the version of the external. Parameters ---------- fatal: bool, optional If True and the external can not be run, a fatal exception is raised. Default is to silently ignore the problem and return an empty version string. quiet: bool, optional If True, the whole operation is done silently. The only information about failure will be the returned empty version string. Returns ------- str The version string of the external, empty if the external can not be run. Notes ----- As a side effect, the detected version string is stored for later reuse. Thus subsequent tests will not try to re-detect. """ pf.debug(f"Check {self.name}\n{self.command}", pf.DEBUG.DETECT) P = process.run(self.command) pf.debug(f"returncode: {P.returncode}\n" f"stdout:\n{P.stdout}\nstderr:\n{P.stderr}", pf.DEBUG.DETECT) version = '' # Some programs write their version to stderr, others to stdout # So we have to try both m = None if P.stdout: m = re.match(self.regex, P.stdout) if m is None and P.stderr: m = re.match(self.regex, P.stderr) if m: version = str(m.group(1)) super().detect(version, fatal) return self.version
External('python', 'python3 --version', r'Python (\S+)') External('admesh', 'admesh --version', r'ADMesh - version (\S+)') External('calculix', "ccx -v|tr '\n' ' '", r'[\n]*.*ersion (\S+)') External('calix', 'calix --version', r'CALIX-(\S+)') External('calpy', 'calpy3 --version', r'calpy (\S+)') External('dxfparser', 'pyformex-dxfparser --version', r'dxfparser (\S+)') External('ffmpeg', 'ffmpeg -version', r'[fF][fF]mpeg version (\S+)') External('freetype', 'freetype-config --ftversion', r'(\S+)') External('gts', 'gtsset -h', r'Usage: (gts)') External('gts-bin', 'gts2stl -h', r'Usage: (gts)') External('gts-extra', 'gtsinside -h', r'Usage: (gts)') External('imagemagick', 'import -version', r'Version: ImageMagick (\S+)') External('instant-meshes', 'instant-meshes -h', r'Syntax: (instant-meshes)') External('postabq', 'pyformex-postabq -V', r'postabq (\S+).*') External('recordmydesktop', 'recordmydesktop --version', r'recordMyDesktop v(\S+)') External('sphinx-build', "sphinx-build --version", r'sphinx-build (\S+)') External('tetgen', "bash -c 'type -p tetgen'", r'\S+(tetgen)') External('units', 'units --version', r'GNU Units version (\S+)') External('zip', 'zip -h', r'.*\nZip (\S+)')
[docs]def listLibraries(): """Return a list with the acceleration libraries""" from pyformex import lib return [m.__name__ for m in lib.accelerated]
[docs]def listShaders(): """Return a list with the available GPU shader programs. Returns ------- list A list of the shader versions available. Notes ----- Shader programs are stored in the pyformex/glsl directory and consist of at least of two files: 'vertex_shader_SHADER.c' and 'fragment_shader_SHADER.c'. The SHADER part is the version mnemomic which can be used in the '--shader SHADER' option of the pyformex command. """ files = pf.cfg['shaderdir'].listTree( includefile=['vertex_shader_.*[.]c$', 'fragment_shader_.*[.]c$']) files = [f.name for f in files] vshaders = [f[14:-2] for f in files if f.startswith('v')] fshaders = [f[16:-2] for f in files if f.startswith('f')] shaders = set(vshaders) & set(fshaders) return sorted(shaders)
[docs]def detectedSoftware(comp='SME'): """Return a dict with detected software. Parameters ---------- comp: str The components to be detected. The string is composed of the characters 'S', M' and 'E', each identifying one of the components: - S: detects system software including Python and pyFormex, - M: detects Python modules used by pyFormex, - E: detects software used by pyFormex as external commands. Returns ------- dict A dict with one or more of the keys 'System', 'Modules' and 'Externals', each having a dict as value: - System: contains information about system, pyFormex, Python - Modules: the detected Python modules - Externals: the detected external programs """ soft = {} if 'S' in comp: system, host, release, version, arch = os.uname() System = { 'pyFormex_version': pf.__version__.split()[0], 'pyFormex_installtype': pf.installtype, 'pyFormex_fullversion': pf.fullVersion(), 'pyFormex_libraries': ', '.join(listLibraries()), 'pyFormex_shaders': ', '.join(listShaders()), 'Python_version': sys.version.split()[0], 'Python_fullversion': sys.version.replace('\n', ' '), 'System': system, 'Host': host, 'Release': release, 'Version': version, 'Arch': arch, } if pf.GUI: System['Qt bindings'] = pf.gui.bindings soft['System'] = System if 'M' in comp: Module.detect_all() soft['Modules'] = Module.detected(all=True) if 'E' in comp: External.detect_all() soft['Externals'] = External.detected(all=True) return soft
def reportSoftware(soft=None, header=None, sort=False): from pyformex import utils notfound = '** Not Found **' def format_dict(d, sort): keys = sorted(d.keys()) if sort else d items = [f" {k} ({d[k] if d[k] else notfound})" for k in keys] return '\n'.join(items) if soft is None: soft = detectedSoftware() s = "" if header: header = str(header) s += utils.underlineHeader(header) for key, desc, srt in [ ('System', 'Installed System', False), ('Modules', 'Detected Python Modules', sort), ('Externals', 'Detected External Programs', sort) ]: s += f"\n{desc}:\n" s += format_dict(soft[key], srt) s += '\n' return s comparators = { '==': operator.__eq__, '!=': operator.__ne__, '>': operator.__gt__, '>=': operator.__ge__, '<': operator.__lt__, '<=': operator.__le__, } _re_Required = re.compile(r'(?P<cmp>(==|!=|([<>]=?)))? *(?P<require>.*)')
[docs]def compareVersion(has, want): """Check whether a detected version matches the requirements. has is the version string detected. want is the required version string, possibly preceded by one of the doubly underscored comparison operators: __gt__, etc. If no comparison operator is specified, '__eq__' is assumed. Note that any tail behind x.y.z version is considered to be later version than x.y.z. Returns the result of the comparison: True or False Examples: >>> compareVersion('2.7','2.4.3') False >>> compareVersion('2.7','>2.4.3') True >>> compareVersion('2.7','>= 2.4.3') True >>> compareVersion('2.7','>= 2.7-rc3') False >>> compareVersion('2.7-rc4','>= 2.7-rc3') True """ if not has: return False m = _re_Required.match(want) if not m: return False d = m.groupdict() want = d['require'] comp = d['cmp'] if comp is None: comp = '==' has = SaneVersion(has) want = SaneVersion(want) return comparators[comp](has, want)
def checkItem(has, want): if compareVersion(has, want): return 'OK' else: return 'FAIL'
[docs]def checkDict(has, want): """Check that software dict has has the versions required in want""" return [(k, has[k], want[k], checkItem(has[k], want[k])) for k in want]
# TODO: only detect the components in requirements # because detecting everything is slow
[docs]def checkSoftware(req, report=False): """Check that we have the matching components Returns True or False. If report=True, also returns a string with a full report. """ from pyformex import utils soft = detectedSoftware() comp = [] for k in req: comp.extend(checkDict(soft[k], req[k])) result = all([s[3] == 'OK' for s in comp]) fmt = "%30s %15s %15s %10s\n" if report: s = utils.underlineHeader(fmt % ("Item", "Found", "Required", "OK?")) for item in comp: s += fmt % item s += f"RESULT={'OK' if result else 'FAIL'}" return result, s else: return result
[docs]def registerSoftware(req): """Register the current values of required software""" from pyformex import utils soft = detectedSoftware() reg = dict() for k in req: reg[k] = utils.selectDict(soft[k], list(req[k].keys())) return reg
[docs]def formatDict(d, indent=2, sort_keys=False, mode='json'): """Format a possibly nested dict >>> d = {'a':0, 'd':{'y':'s', 'x':'t'}, 'b':1} >>> print(formatDict(d)) { "a": 0, "d": { "y": "s", "x": "t" }, "b": 1 } >>> print(formatDict(d, mode='python')) {'a': 0, 'd': {'y': 's', 'x': 't'}, 'b': 1} """ if mode == 'json': import json return json.dumps(d, indent=indent, sort_keys=False) else: return f"{d!r}"
[docs]def storeSoftware(soft, fn, mode='json', indent=2): """Store the software collection on file. The collection is by default stored in JSON format. """ with open(fn, 'w') as fil: fil.write(formatDict(soft, indent=indent, mode=mode)) fil.write('\n')
[docs]def readSoftware(fn): """Read the software collection from file. Default mode is 'python' because it reads json as well as python. 'legacy' can be used to read old software files, though it is recommended to change the files by removing the 'soft = ' at the start. """ with open(fn, 'r') as fil: txt = fil.read() if txt.startswith('soft'): # This is probably a legacy format txt = txt.split('=')[1] soft = eval(txt) return soft
#### execute as pyFormex script for testing ######## if __name__ in ["_draw__", "__script__"]: Required = { 'System': { 'pyFormex_installtype': 'R', 'Python_version': '>= 3.7.0', }, 'Modules': { 'pyformex': '>= 2.7', 'matplotlib': '1.1.1', 'numpy': '1.16', }, 'Externals': { 'admesh': '>= 0.95', }, } soft = detectedSoftware() print((reportSoftware(header="Detected Software"))) print('\n ') print((reportSoftware(Required, header="Required Software"))) print('\n ') print('CHECK') ok, report = checkSoftware(Required, True) print(report) reg = registerSoftware(Required) print("REGISTER") print(formatDict(reg)) storeSoftware(reg, 'checksoft.json') req = readSoftware('checksoft.json') print('CHECK REGISTERED') print(formatDict(req)) ok, report = checkSoftware(req, True) print(report) # End